Targeted deep sequencing of Populus maximowiczii: sample Psv92 - SRA

SRX20739627: Targeted deep sequencing of Populus maximowiczii: sample Psv92
1 ILLUMINA (Illumina MiSeq) run: 50,534 spots, 17.4M bases, 11.4Mb downloads

Design: PCR amplification of target regions: genomic loci (NTS 5S rDNA, ITS, DSH 2, DSH 5, DSH 8, DSH 12, DSH 29, 6, 15, 16, X18), chloroplast loci (trnGpsbK-psbI, rps2rpoC2, rpoC2-rpoC1), and loci of the sex-determining region and ARR17 gene

Submitted by: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences

Study: Phylogenetic relationships of Aigeiros Duby and Tacamahaca Spach poplars (genus Populus L., Salicaceae) based on the sex-determining region and traditionally used nuclear and chloroplast sequences

PRJNA943410 • SRP445189 • All experiments • All runs

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Phylogenetic relationships of 379 poplars from sections Aigeiros Duby and Tacamahaca Spach (genus Populus L., Salicaceae) were determined based on Illumina targeted deep sequencing of loci corresponding to the sex-determining region and traditionally used nuclear (NTS 5S rDNA, ITS, DSH 2, DSH 5, DSH 8, DSH 12, DSH 29, 6, 15, 16, X18) and chloroplast (trnG-psbK-psbI, rps2-rpoC2, rpoC2-rpoC1) sequences.

Sample: herbarium accession

SAMN35794944 • SRS18029553 • All experiments • All runs

Organism: Populus maximowiczii

Library:

Name: Psv92

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: GENOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 50,534 spots, 17.4M bases, 11.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR24982884	50,534	17.4M	11.4Mb	2023-06-21

ID:: 28170168

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